Physiol. Genomics -- Table of Contents (April 14 2005, 21 [2])

HOME

HELP

FEEDBACK

SUBSCRIPTIONS

Reviews:

Despina Sanoudou, Elizabeth Vafiadaki, Demetrios A. Arvanitis, Evangelia Kranias, and Aikaterini Kontrogianni-Konstantopoulos: Array lessons from the heart: focus on the genome and transcriptome of cardiomyopathies
Physiol. Genomics 21: 131-143, 2005; doi:10.1152/physiolgenomics.00259.2004 [Abstract] [Full Text] [PDF]

Call For Papers: Comparative Genomics:

Jun-ichi Hikima, Mara L. Lennard, Melanie R. Wilson, Norman W. Miller, L. William Clem, and Gregory W. Warr: Evolution of vertebrate E protein transcription factors: comparative analysis of the E protein gene family in Takifugu rubripes and humans
Physiol. Genomics 21: 144-151, 2005. First published February 15, 2005; doi:10.1152/physiolgenomics.00312.2004 [Abstract] [Full Text] [PDF]

Research Articles:

Andrei I. Ivanov, Alexandre A. Steiner, Adrienne C. Scheck, and Andrej A. Romanovsky: Expression of Eph receptors and their ligands, ephrins, during lipopolysaccharide fever in rats
Physiol. Genomics 21: 152-160, 2005. First published January 25, 2005; doi:10.1152/physiolgenomics.00043.2004 [Abstract] [Full Text] [PDF]

Christian R. Marshall, Joanne A. Fox, Stefanie L. Butland, B. F. Francis Ouellette, Fiona S. L. Brinkman, and Glen F. Tibbits: Phylogeny of Na⁺/Ca²⁺ exchanger (NCX) genes from genomic data identifies new gene duplications and a new family member in fish species
Physiol. Genomics 21: 161-173, 2005. First published March 1, 2005; doi:10.1152/physiolgenomics.00286.2004 [Abstract] [Full Text] [PDF] [Supplementary Figures]

Julien de Lorgeril, Denis Saulnier, Michael G. Janech, Yannick Gueguen, and Evelyne Bachère: Identification of genes that are differentially expressed in hemocytes of the Pacific blue shrimp (Litopenaeus stylirostris) surviving an infection with Vibrio penaeicida
Physiol. Genomics 21: 174-183, 2005. First published February 22, 2005; doi:10.1152/physiolgenomics.00281.2004 [Abstract] [Full Text] [PDF]

A. Lionikas, D. A. Blizard, G. S. Gerhard, D. J. Vandenbergh, J. T. Stout, G. P. Vogler, G. E. McClearn, and L. Larsson: Genetic determinants of weight of fast- and slow-twitch skeletal muscle in 500-day-old mice of the C57BL/6J and DBA/2J lineage
Physiol. Genomics 21: 184-192, 2005. First published February 1, 2005; doi:10.1152/physiolgenomics.00209.2004 [Abstract] [Full Text] [PDF] [Supplemental Material]

Susanne Klaus, Bettina Rudolph, Cord Dohrmann, and Roland Wehr: Expression of uncoupling protein 1 in skeletal muscle decreases muscle energy efficiency and affects thermoregulation and substrate oxidation
Physiol. Genomics 21: 193-200, 2005. First published February 1, 2005; doi:10.1152/physiolgenomics.00299.2004 [Abstract] [Full Text] [PDF]

Sankaranand S. Vukkadapu, Jenine M. Belli, Koji Ishii, Anil G. Jegga, John J. Hutton, Bruce J. Aronow, and Jonathan D. Katz: Dynamic interaction between T cell-mediated ß-cell damage and ß-cell repair in the run up to autoimmune diabetes of the NOD mouse
Physiol. Genomics 21: 201-211, 2005. First published January 25, 2005; doi:10.1152/physiolgenomics.00173.2004 [Abstract] [Full Text] [PDF] [Supplemental Figure and Tables]

Mohammed S. Orloff, Sudha K. Iyengar, Cheryl A. Winkler, Katrina A. B. Goddard, Richard A. Dart, Tejinder S. Ahuja, Michele Mokrzycki, William A. Briggs, Stephen M. Korbet, Paul L. Kimmel, Eric E. Simon, Howard Trachtman, David Vlahov, Donna M. Michel, Jeffrey S. Berns, Michael C. Smith, Jeffrey R. Schelling, John R. Sedor, and Jeffrey B. Kopp: Variants in the Wilms’ tumor gene are associated with focal segmental glomerulosclerosis in the African American population
Physiol. Genomics 21: 212-221, 2005. First published February 1, 2005; doi:10.1152/physiolgenomics.00201.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Kristen E. Knoll, Jennifer L. Pietrusz, and Mingyu Liang: Tissue-specific transcriptome responses in rats with early streptozotocin-induced diabetes
Physiol. Genomics 21: 222-229, 2005. First published February 15, 2005; doi:10.1152/physiolgenomics.00231.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Xiao-Pei Gao, Qinghui Liu, Michael Broman, Dan Predescu, Randall S. Frey, and Asrar B. Malik: Inactivation of CD11b in a mouse transgenic model protects against sepsis-induced lung PMN infiltration and vascular injury
Physiol. Genomics 21: 230-242, 2005; doi:10.1152/physiolgenomics.00291.2004 [Abstract] [Full Text] [PDF]

Ondrej Seda, Frantisek Liska, Drahomira Krenova, Ludmila Kazdova, Lucie Sedova, Tomas Zima, Junzheng Peng, Kveta Pelinkova, Johanne Tremblay, Pavel Hamet, and Vladimir Kren: Dynamic genetic architecture of metabolic syndrome attributes in the rat
Physiol. Genomics 21: 243-252, 2005. First published February 22, 2005; doi:10.1152/physiolgenomics.00230.2004 [Abstract] [Full Text] [PDF] [Supplemental Material]

Paul G. Giresi, Eric J. Stevenson, Joachim Theilhaber, Alan Koncarevic, Jascha Parkington, Roger A. Fielding, and Susan C. Kandarian: Identification of a molecular signature of sarcopenia
Physiol. Genomics 21: 253-263, 2005. First published February 1, 2005; doi:10.1152/physiolgenomics.00249.2004 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Marjan Trutschl, Tzvetanka D. Dinkova, and Robert E. Rhoads: Application of machine learning and visualization of heterogeneous datasets to uncover relationships between translation and developmental stage expression of C. elegans mRNAs
Physiol. Genomics 21: 264-273, 2005. First published February 8, 2005; doi:10.1152/physiolgenomics.00307.2004 [Abstract] [Full Text] [PDF]

Toolbox:

Makoto Kano, Shuichi Tsutsumi, Nobutaka Kawahara, Yan Wang, Akitake Mukasa, Takaaki Kirino, and Hiroyuki Aburatani: A meta-clustering analysis indicates distinct pattern alteration between two series of gene expression profiles for induced ischemic tolerance in rats
Physiol. Genomics 21: 274-283, 2005. First published February 15, 2005; doi:10.1152/physiolgenomics.00107.2004 [Abstract] [Full Text] [PDF] [Supplement Tables]

Zhongming Chen and Lin Liu: RealSpot: software validating results from DNA microarray data analysis with spot images
Physiol. Genomics 21: 284-291, 2005. First published February 1, 2005; doi:10.1152/physiolgenomics.00236.2004 [Abstract] [Full Text] [PDF]

Cover Caption:

Cover Cover: Expression of the ife-4::GFP transgene as an extrachromosomal array during Caenorhabditis elegans development. ife-4::GFP(lsEx385) animals were hypochlorite treated to obtain embryos and grown to the desired developmental stages. Animals in larval stage 4 were imaged with a Nomarski miscroscope (top left) and epifluorescence (top right). Polysomal behavior of mRNAs for ife-4(ok320) vs. N2 in subpopulations of C. elegans defined by developmental expression patterns (bottom). For details, see Trutschl M, Dinkova TD, and Rhoads RE. Application of machine learning and visualization of heterogenous data sets to uncover relationships between translation and developmental state expression of C. elegans mRNAs. Physiol. Genomics 21: 264-273, 2005. First published February 8, 2005; doi: 10.1152/physiolgenomics.00307.2004.