Physiol. Genomics -- Table of Contents (August 2007, 30 [3])

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Perspectives:

Lauren Gerard Koch and Steven L. Britton: Evolution, atmospheric oxygen, and complex disease
Physiol. Genomics 30: 205-208, 2007. First published May 1, 2007; doi:10.1152/physiolgenomics.00043.2007 [Abstract] [Full Text] [PDF]

Mingyu Liang: Integrative pathway knowledge bases as a tool for systems molecular medicine
Physiol. Genomics 30: 209-212, 2007. First published May 8, 2007; doi:10.1152/physiolgenomics.00002.2007 [Abstract] [Full Text] [PDF]

Call For Papers: Comparative Genomics:

Yashwanth Radhakrishnan, Mario A. Fares, Frank S. French, and Susan H. Hall: Comparative genomic analysis of a mammalian ß-defensin gene cluster
Physiol. Genomics 30: 213-222, 2007. First published April 24, 2007; doi:10.1152/physiolgenomics.00263.2006 [Abstract] [Full Text] [PDF] [Supplemental Data]

Jingli Yang, Caroline McCart, Debra J. Woods, Selim Terhzaz, Karen G. Greenwood, Richard H. ffrench-Constant, and Julian A. T. Dow: A Drosophila systems approach to xenobiotic metabolism
Physiol. Genomics 30: 223-231, 2007. First published May 8, 2007; doi:10.1152/physiolgenomics.00018.2007 [Abstract] [Full Text] [PDF]

Research Articles:

Julie Demars, Juliette Riquet, Marie-Pierre Sanchez, Yvon Billon, Jean-François Hocquette, Bénédicte Lebret, Nathalie Iannuccelli, Jean-Pierre Bidanel, Denis Milan, and Florence Gondret: Metabolic and histochemical characteristics of fat and muscle tissues in homozygous or heterozygous pigs for the body composition QTL located on chromosome 7
Physiol. Genomics 30: 232-241, 2007. First published April 10, 2007; doi:10.1152/physiolgenomics.00270.2006 [Abstract] [Full Text] [PDF]

Merav Kedmi and Avi Orr-Urtreger: Expression changes in mouse brains following nicotine-induced seizures: the modulation of transcription factor networks
Physiol. Genomics 30: 242-252, 2007. First published April 24, 2007; doi:10.1152/physiolgenomics.00288.2006 [Abstract] [Full Text] [PDF] [Supplemental Table and Figure]

Orla M. Keane, Ken G. Dodds, Allan M. Crawford, and John C. McEwan: Transcriptional profiling of Ovis aries identifies Ovar-DQA1 allele frequency differences between nematode-resistant and susceptible selection lines
Physiol. Genomics 30: 253-261, 2007. First published May 8, 2007; doi:10.1152/physiolgenomics.00273.2006 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Daniel R. Prows, Amanda P. Hafertepen, William J. Gibbons, Jr., Abby V. Winterberg, and Todd G. Nick: A genetic mouse model to investigate hyperoxic acute lung injury survival
Physiol. Genomics 30: 262-270, 2007. First published May 8, 2007; doi:10.1152/physiolgenomics.00232.2006 [Abstract] [Full Text] [PDF]

Daniel R. Prows, Amanda P. Hafertepen, Abby V. Winterberg, William J. Gibbons, Jr., Chunyan Liu, and Todd G. Nick: Genetic analysis of hyperoxic acute lung injury survival in reciprocal intercross mice
Physiol. Genomics 30: 271-281, 2007. First published May 8, 2007; doi:10.1152/physiolgenomics.00038.2007 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figures]

Richard R. Almon, Debra C. DuBois, Zhenling Yao, Eric P. Hoffman, Svetlana Ghimbovschi, and William J. Jusko: Microarray analysis of the temporal response of skeletal muscle to methylprednisolone: comparative analysis of two dosing regimens
Physiol. Genomics 30: 282-299, 2007. First published May 1, 2007; doi:10.1152/physiolgenomics.00242.2006 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Xiaodong Mu, Lisa D. Brown, Yewei Liu, and Martin F. Schneider: Roles of the calcineurin and CaMK signaling pathways in fast-to-slow fiber type transformation of cultured adult mouse skeletal muscle fibers
Physiol. Genomics 30: 300-312, 2007. First published May 1, 2007; doi:10.1152/physiolgenomics.00286.2006 [Abstract] [Full Text] [PDF] [Supplemental Table and Figure]

Mark H. Chin, Alex B. Geng, Arshad H. Khan, Wei-Jun Qian, Vladislav A. Petyuk, Jyl Boline, Shawn Levy, Arthur W. Toga, Richard D. Smith, Richard M. Leahy, and Desmond J. Smith: A genome-scale map of expression for a mouse brain section obtained using voxelation
Physiol. Genomics 30: 313-321, 2007. First published May 15, 2007; doi:10.1152/physiolgenomics.00287.2006 [Abstract] [Full Text] [PDF] [Supplemental Figures and Tables]

Michael R. Garrett, William T. Gunning, Tracy Radecki, and Arti Richard: Dissection of a genetic locus influencing renal function in the rat and its concordance with kidney disease loci on human chromosome 1q21
Physiol. Genomics 30: 322-334, 2007. First published May 15, 2007; doi:10.1152/physiolgenomics.00001.2007 [Abstract] [Full Text] [PDF] [Supplemental Figures and Tables]

Judith C. Sluimer, Natasja Kisters, Kitty B. Cleutjens, Oscar L. Volger, Anton J. Horrevoets, Luc H. van den Akker, Ann-Pascale J. Bijnens, and Mat J. Daemen: Dead or alive: gene expression profiles of advanced atherosclerotic plaques from autopsy and surgery
Physiol. Genomics 30: 335-341, 2007. First published May 22, 2007; doi:10.1152/physiolgenomics.00076.2007 [Abstract] [Full Text] [PDF] [Supplemental Figures and Tables]

Weidong Su, Craig R. Bush, Brian M. Necela, Shelly R. Calcagno, Nicole R. Murray, Alan P. Fields, and E. Aubrey Thompson: Differential expression, distribution, and function of PPAR- ${gamma}$ in the proximal and distal colon
Physiol. Genomics 30: 342-353, 2007. First published May 22, 2007; doi:10.1152/physiolgenomics.00042.2007 [Abstract] [Full Text] [PDF] [Supplemental Table]

Kristen E. Govoni, Seong Keun Lee, Yoon-Sok Chung, Richard R. Behringer, Jon E. Wergedal, David J. Baylink, and Subburaman Mohan: Disruption of insulin-like growth factor-I expression in type II ${alpha}$ I collagen-expressing cells reduces bone length and width in mice
Physiol. Genomics 30: 354-362, 2007. First published May 22, 2007; doi:10.1152/physiolgenomics.00022.2007 [Abstract] [Full Text] [PDF]

Mark Kidd, Boaz Nadler, Shrikant Mane, Geeta Eick, Maximillian Malfertheiner, Manish Champaneria, Roswitha Pfragner, and Irvin Modlin: GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR
Physiol. Genomics 30: 363-370, 2007. First published April 24, 2007; doi:10.1152/physiolgenomics.00251.2006 [Abstract] [Full Text] [PDF]

Cover Caption:

Cover

Cover: Fluorescent arteriograms of pial circulation of C57BL/6 and BALB/c mouse strains. Faint vessels in background are venules containing dilute fluorescein. Outer branches of anterior, middle, and posterior cerebral arteries are interconnected by abundant collaterals in C57BL/6 (red arrows), whereas collaterals are absent in BALB/c. For details, see Chalothorn D, Clayton JA, Zhang H, Pomp D, and Faber JE. Collateral density, remodeling, and VEGF-A expression differ widely between mouse strains Physiol Genomics 30: 179�191, 2007; (first published April 10, 2007); doi:10.1152/physiolgenomics.00047.2007.