Physiol. Genomics -- Table of Contents (November 2007, 31 [3])

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Editorial Focus:

Eva van Rooij and Eric N. Olson: microRNAs put their signatures on the heart
Physiol. Genomics 31: 365-366, 2007. First published September 11, 2007; doi:10.1152/physiolgenomics.00206.2007 [Full Text] [PDF]

Sadakatsu Ikeda, Sek Won Kong, Jun Lu, Egbert Bisping, Hao Zhang, Paul D. Allen, Todd R. Golub, Burkert Pieske, and William T. Pu: Altered microRNA expression in human heart disease
Physiol. Genomics 31: 367-373, 2007. First published August 21, 2007; doi:10.1152/physiolgenomics.00144.2007 [Abstract] [Full Text] [PDF] [Supplemental Table]

Call For Papers: Comparative Genomics:

Wei Shi, Wanlei Zhou, and Dakang Xu: Identifying cis-regulatory elements by statistical analysis and phylogenetic footprinting and analyzing their coexistence and related gene ontology
Physiol. Genomics 31: 374-384, 2007. First published September 11, 2007; doi:10.1152/physiolgenomics.00085.2006 [Abstract] [Full Text] [PDF] [Supplemental Tables and Figure]

Research Articles:

Svetlana Kalujnaia, Iain S. McWilliam, Vitalii A. Zaguinaiko, Anja L. Feilen, John Nicholson, Neil Hazon, Christopher P. Cutler, and Gordon Cramb: Transcriptomic approach to the study of osmoregulation in the European eel Anguilla anguilla
Physiol. Genomics 31: 385-401, 2007. First published July 31, 2007; doi:10.1152/physiolgenomics.00059.2007 [Abstract] [Full Text] [PDF]

Diego Ardigo, Themistocles L. Assimes, Stephen P. Fortmann, Alan S. Go, Mark Hlatky, Evangelos Hytopoulos, Carlos Iribarren, Philip S. Tsao, Raymond Tabibiazar, Thomas Quertermous for the ADVANCE Investigators: Circulating chemokines accurately identify individuals with clinically significant atherosclerotic heart disease
Physiol. Genomics 31: 402-409, 2007. First published August 14, 2007; doi:10.1152/physiolgenomics.00104.2007 [Abstract] [Full Text] [PDF] [Supplemental Data]

Koustav Ganguly, Tobias Stoeger, Scott C. Wesselkamper, Claudia Reinhard, Maureen A. Sartor, Mario Medvedovic, Craig R. Tomlinson, Ines Bolle, John M. Mason, George D. Leikauf, and Holger Schulz: Candidate genes controlling pulmonary function in mice: transcript profiling and predicted protein structure
Physiol. Genomics 31: 410-421, 2007. First published September 5, 2007; doi:10.1152/physiolgenomics.00260.2006 [Abstract] [Full Text] [PDF] [Supplemental Table and Figures]

Andrew R. Tapper, Sheri L. McKinney, Michael J. Marks, and Henry A. Lester: Nicotine responses in hypersensitive and knockout ${alpha}$ 4 mice account for tolerance to both hypothermia and locomotor suppression in wild-type mice
Physiol. Genomics 31: 422-428, 2007. First published August 21, 2007; doi:10.1152/physiolgenomics.00063.2007 [Abstract] [Full Text] [PDF]

Vikas Misra, Hannah Lee, Anju Singh, Kewu Huang, Rajesh K. Thimmulappa, Wayne Mitzner, Shyam Biswal, and Clarke G. Tankersley: Global expression profiles from C57BL/6J and DBA/2J mouse lungs to determine aging-related genes
Physiol. Genomics 31: 429-440, 2007. First published August 28, 2007; doi:10.1152/physiolgenomics.00060.2007 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Miroslaw Mackiewicz, Keith R. Shockley, Micah A. Romer, Raymond J. Galante, John E. Zimmerman, Nirinjini Naidoo, Donald A. Baldwin, Shane T. Jensen, Gary A. Churchill, and Allan I. Pack: Macromolecule biosynthesis: a key function of sleep
Physiol. Genomics 31: 441-457, 2007. First published August 14, 2007; doi:10.1152/physiolgenomics.00275.2006 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Thomas N. Ferraro, George G. Smith, Candice L. Schwebel, Falk W. Lohoff, Patrick Furlong, Wade H. Berrettini, and Russell J. Buono: Quantitative trait locus for seizure susceptibility on mouse chromosome 5 confirmed with reciprocal congenic strains
Physiol. Genomics 31: 458-462, 2007. First published August 14, 2007; doi:10.1152/physiolgenomics.00123.2007 [Abstract] [Full Text] [PDF]

C. Michele Nawata, Carrie C. Y. Hung, Tommy K. N. Tsui, Jonathan M. Wilson, Patricia A. Wright, and Chris M. Wood: Ammonia excretion in rainbow trout (Oncorhynchus mykiss): evidence for Rh glycoprotein and H⁺-ATPase involvement
Physiol. Genomics 31: 463-474, 2007. First published August 21, 2007; doi:10.1152/physiolgenomics.00061.2007 [Abstract] [Full Text] [PDF]

Hong Ji and Alexander A. Bachmanov: Differences in postingestive metabolism of glutamate and glycine between C57BL/6ByJ and 129P3/J mice
Physiol. Genomics 31: 475-482, 2007. First published September 25, 2007; doi:10.1152/physiolgenomics.00013.2007 [Abstract] [Full Text] [PDF]

Neelakanteswar Aluru and Mathilakath M. Vijayan: Hepatic transcriptome response to glucocorticoid receptor activation in rainbow trout
Physiol. Genomics 31: 483-491, 2007. First published September 11, 2007; doi:10.1152/physiolgenomics.00118.2007 [Abstract] [Full Text] [PDF]

Hui Chen, Tamás Ördög, Junwei Chen, David L. Young, Michael R. Bardsley, Doug Redelman, Sean M. Ward, and Kenton M. Sanders: Differential gene expression in functional classes of interstitial cells of Cajal in murine small intestine
Physiol. Genomics 31: 492-509, 2007. First published September 25, 2007; doi:10.1152/physiolgenomics.00113.2007 [Abstract] [Full Text] [PDF] [Supplemental Figure and Tables]

Yi-Wen Chen, Chris M. Gregory, Mark T. Scarborough, Rongye Shi, Glenn A. Walter, and Krista Vandenborne: Transcriptional pathways associated with skeletal muscle disuse atrophy in humans
Physiol. Genomics 31: 510-520, 2007. First published September 5, 2007; doi:10.1152/physiolgenomics.00115.2006 [Abstract] [Full Text] [PDF] [Supplemental Table]

Fiona I. J. Crawford, Cassandra L. Hodgkinson, Elena Ivanova, Larisa B. Logunova, Gary J. Evans, Stephan Steinlechner, and Andrew S. I. Loudon: Influence of torpor on cardiac expression of genes involved in the circadian clock and protein turnover in the Siberian hamster (Phodopus sungorus)
Physiol. Genomics 31: 521-530, 2007. First published September 11, 2007; doi:10.1152/physiolgenomics.00131.2007 [Abstract] [Full Text] [PDF] [Supplemental Tables] [Addendum]

A. S. Borders, M. A. Hersh, M. L. Getchell, N. van Rooijen, D. A. Cohen, A. J. Stromberg, and T. V. Getchell: Macrophage-mediated neuroprotection and neurogenesis in the olfactory epithelium
Physiol. Genomics 31: 531-543, 2007. First published September 11, 2007; doi:10.1152/physiolgenomics.00008.2007 [Abstract] [Full Text] [PDF] [Supplemental Tables]

P. Christopher LaRosa, Jean-Jack M. Riethoven, Han Chen, Yuannan Xia, You Zhou, Mei Chen, Jess Miner, and Michael E. Fromm: Trans-10, cis-12 conjugated linoleic acid activates the integrated stress response pathway in adipocytes
Physiol. Genomics 31: 544-553, 2007. First published September 18, 2007; doi:10.1152/physiolgenomics.00156.2007 [Abstract] [Full Text] [PDF] [Supplemental Tables]

Toolbox:

Deming Gou, Honghao Zhang, Pradyumna S. Baviskar, and Lin Liu: Primer extension-based method for the generation of a siRNA/miRNA expression vector
Physiol. Genomics 31: 554-562, 2007. First published September 5, 2007; doi:10.1152/physiolgenomics.00005.2007 [Abstract] [Full Text] [PDF]

Cover Caption:

Cover

Cover: Top: shown are parental strains used to originate the panels of recombinant inbred and chromosome substitution strains used in the study; the albino mouse is an adult A/J, the black one is an adult C57BL/6J. Bottom: cardiomyocytes isolated from the hearts of 12-wk-old male mice (either parental or chromosome Y substitution strains) and visualized by autofluorescence. From left to right: cells from A/J, A/J-chrY^C57BL/6J/NaJ, C57BL/6J-chrY^A/J/NaJ, and C57BL/6J mice. For details, see Llamas B, Belanger S, Picard S, and Deschepper CF. Cardiac mass and cardiomyocyte size are governed by different genetic loci on either autosomes or chromosome Y in recombinant inbred mice. Physiol Genomics (first published June 12, 2007; doi:10.1152/physiolgenomics.00072.2007).